Faculty Research PMC The relational data model that underlies JCMS minimizes data redundancy, enforces data integrity, leverages controlled vocabularies, and enables accurate data retrieval against large data sets. The Jackson Laboratory Colony Management System (JCMS) source code is now available as an Open Source software product. https://doi.org/10.1007/s00335-010-9250-1, DOI: https://doi.org/10.1007/s00335-010-9250-1. JCMS is a relational database application that was developed specifically to meet biomedical research community demands for a well-engineered flexible database system supporting mouse animal husbandry and data management. The Jackson Laboratory Colony Management System (JCMS) is a software application for managing data and information related to research mouse colonies, associated biospecimens, and experimental protocols. 2018 Dec;15(6):642-647. doi: 10.1089/zeb.2018.1609. FOIA government site. The bottom panel shows details for selected mouse. The JAX Colony Management System (JCMS) is a free multi-user data system for managing mouse colonies in a research environment. Known issues and test notes are published with each software release. The first workings began around 1820. To load experimental data into the database, users can use the bulk data-load operations in JCMS that support both flexible file format specification and preload data-checking scripts. Each new release of JCMS is accompanied with two upgrade programs (one for MySQL users and one for Access users). The first step in configuring the JCMS application is to specify the roles of the individuals who will be using the software (see the JCMS Security Model subsection below for descriptions of the concept of user roles). The current design of this technology does not use a DBMS that is capable of protecting VA Sensitive data in transit or at rest. Operating Systems Supported by the Technology. Disclaimer. This technology is not portable as it runs only on Windows platforms. 22 Intensive Breeding System Cage cards can be custom formatted in any size or layout orientation that is supported by the printer, The JCMS sample storage browser. The bottom panel shows details for selected mouse. Epub 2007 Jun 14. Our experts manage simple or complex projects on time and within budget. Every entity in this module (e.g., mating, litter) has a relationship with the mouse table which facilitates complete pedigree tracking over unlimited breeding generations (from matings to litters to mouse), timed matings (plug dates), genotype tracking, mouse scheduling, and tracking mouse caging. MySQL is a registered trademark of MySQL AB in the U.S., the European Union, and other countries. Existing software solutions for data management vary significantly in terms of cost, implementation requirements, flexibility, and level of user support. Fully functional software available for 30-day trial, Phone and email user support. JCMS meets the criteria for an ideal record-keeping system as outlined by Silver (1995), with additional functionality that supports the management of experimentally derived data as well as standard animal husbandry data. Unable to load your collection due to an error, Unable to load your delegates due to an error, Illustration of the three primary installation configurations for the JCMS application. Future development of the JCMS application will include associating input parameters with tests (such as test setup specifications), creating the concept of a data group so that many data records can be analyzed as one measurement (e.g., time-course data), scheduling treatment, and developing the ability to associate experimental records with samples as well as mice. TopoDB: a novel multifunctional management system for laboratory animal colonies. See this image and copyright information in PMC. For example, a technology approved with a decision for 12.6.4+ would cover any version that is greater than 12.6.4, but would not exceed the .6 decimal ie: 12.6.401
Overview of Today's Presentation 2 Mouse reproduction Factors affecting breeding performance . The application provides operational support for colony management and experimental workflows, sample and data tracking through transaction-based data entry forms, and date-driven work reports. A training database with courses, a comprehensive user guide, and online support is readily available at the JCMS web site. Our experts are ready to help.
JAX Colony Management System (JCMS): an extensible colony and phenotype JCMS runs directly on computers that run one of the PC Windows operating systems, but can be accessed via web browser interfaces from any computer running a Windows, Macintosh, or Linux operating system. In addition to providing you with a dedicated colony supply, we offer additional services including: Donating your strain to JAX fulfills NIH obligations to share mice with other scientists, while significantly reducing the cost of maintaining your mouse models. JCMS runs directly on computers that run one of the PC Windows operating systems, but can be acc Sample attributes such as type of sample, weight, collection date, collection method, preservation method, and age of mouse at time of collection are associated with each sample record.
JCMS 4.1 UserGuide PDF | PDF | Mouse | Experiment - Scribd Secondary responsibilities include removing unwanted data and transferring ownership of data records as needed. The Sample Tracking module allows one to easily locate specific samples or generate inventory reports for storage facilities. Customized for the mutagenesis program at the RIKEN institute.
JAX Colony Management System (JCMS) - DigitalVA JAX Colony Management System (JCMS): an extensible colony and phenotype data management system. Experiment plans are composed of one or more scheduled Experiment tests. The application can also be configured for access via web browsers from PC, Macintosh, or Linux computers by incorporating a middleware solution (discussed below) into the setup. Results-driven Project Mechanical Engineer specializing in Sustainable Industrial Engineering, with a strong background in project management and mechanical design. Mamm Genome 2010 Apr; 21(3-4):205-15. 4). In this example query we have selected live mice with IDs that have EX in the name and are in the STOCK Igf1
/ImJ strain. Pain. JAX Colony Management System Data loads are transactional, so either all valid records load correctly, or the entire transaction is rolled back. A Ames The cost of hosting JCMS will vary depending on the system configuration deployed and which middleware solution (if any) is used; free middleware solutions such as Sun Microsystems VirtualBox (http://www.virtualbox.org/) are available and may be deployed for single-user configurations on Macintosh computers. The site is secure. Future releases will include more vocabularies in the distribution such as terms from the mouse anatomical dictionary (http://www.informatics.jax.org/searches/anatdict_form.shtml). To access the menus on this page please perform the following steps. The expected benefits for users of JCMS are improved vivaria efficiency, improved quality control for experimental studies, and flexible data reporting and retrieval. Khorasani R, Lester JM, Davis SD, Hanlon WB, Fener EF, Seltzer SE, Adams DF, Holman BL. 7). No matter which colony is right for you, your mice are ready when you need them, saving you vivarium space and resources. 6). Animal husbandry workflows are supported by form-driven user interfaces with controlled data entry points. Major areas of planned new functionality for JCMS include support for additional model organisms (e.g., zebrafish, rat), enhanced vivaria management functions (e.g., cage tracking), and support for associating samples with specific experiments. We will age and deliver mice to you when they reach an age appropriate for your research. JCMS can be configured for a single user or multiple users in small- to medium-size work groups. JCMS runs directly on computers running a Windows operating system. Per the May 5th, 2015 memorandum from the VA Chief Information Security Officer (CISO) FIPS 140-2 Validate Full Disk Encryption (FOE) for Data at Rest in Database Management Systems (DBMS) and in accordance with Federal requirements and VA policy, database management must use Federal Information Processing Standards (FIPS) 140-2 compliant encryption to protect the confidentiality and integrity of VA information at rest at the application level. 1). Macintosh users can also use Microsoft Windows PC virtualization software program such as Parallels or vmWare to run JCMS directly on a modern Intel Macintosh computer. Animal husbandry workflows are supported by form-driven user interfaces with controlled data entry points. BR_WR0002 has three parent mouse records (trio mating): HH-W0002, HH-W0003, and HH-W0004. Near-term releases of the JCMS application will include new cage management functions with historical usage reporting, support for assisted reproductive technology matings (e.g., in vitro fertilization), and advanced experimental data management functionality. User support for JCMS is provided through a group email list and a monitored community electronic discussion forum (http://community.jax.org/forums/default.aspx?GroupID=7). London: Metheun & Co Ltd; 1959. JCMS allows users to design and print cage cards with information derived from the database about the mice housed in the cage (Fig. (1) JCMS can be used as a stand-alone application for a single user, or (2) in a multi-user networked configuration. The next level of data access is called the owner level. Clipboard, Search History, and several other advanced features are temporarily unavailable. Ideally, one would like to maintain records in a format that readily allows one to determine the relationship, if any, that exists between any two or more components of the colony, past or present. A number of software solutions have been implemented that are specifically designed for the management of animal husbandry and phenotyping data. Other colony management programs frequently have limited customization options or require costly subscriptions to use desirable features (Table 2). The Jackson Laboratory Colony Management System (JCMS) is a software application for managing data and information related to research mouse colonies, associated biospecimens, and experimental protocols. The JCMS software project is supported in part by NIH GM072863 (CJB), the Howard Hughes Medical Institute (HHMI), and The Jackson Laboratory. By limiting edit privileges for controlled vocabularies, JCMS provides an important tool for lab managers to ensure consistent common annotations for all mice in the database. Scand J Lab Animal Sci. Tutorials available on the web. The Jackson Laboratory, 610 Main Street, Bar Harbor, ME 04609 USA. Oxford University Press, New York. Litter strain and breeding generation terms can be calculated to reduce the potential for data entry errors. In server configuration, JCMS can be deployed using middleware solutions such as Citrix Presentation Manger and deployed from a web interface and accessed from a computer running the Macintosh, Linux, or Windows operating system. Handheld computers that have been tested with JCMS include the Symbol MC50 from Motorola and the 7535G2 from PSION Teklogix. Litter strain and breeding generation terms can be calculated to reduce the potential for data entry errors. Posted 2:47:58 PM. JAX Connect Although all of the JCMS functions are readily accessible from the function bar, a typical JCMS user will use a subset of the JCMS functions (forms) to support their daily workflow and functionality requirements. The report output fields are selected by check-box selection on the right side of the form. Metheun & Co Ltd, London, Silver L (1995) Mouse genetics: concepts and applications. JCMS allows users to design and print cage cards with information derived from the database about the mice housed in the cage (Fig. Some diseases, such as Alzheimers and cancer, develop later in life both in humans and mice. Anyone you share the following link with will be able to read this content: Sorry, a shareable link is not currently available for this article. JCMS running directly to computers that run one of the PC Windows operating systems, but pot be accessed via net browser interfaces from whatsoever dedicated runtime a Windows . The JAX Colony Management System (JCMS) was a free multi-user relational database system for managing research mouse colonies. The JCMS core design was engineered to be extensible, allowing for continued upgrades in both functionality and technology. Major areas of planned new functionality for JCMS include support for additional model organisms (e.g., zebrafish, rat), enhanced vivaria management functions (e.g., cage tracking), and support for associating samples with specific experiments. (1) JCMS, Screen shots of the JCMS welcome page ( a ), main function bar, Typical animal husbandry workflow supported, Typical animal husbandry workflow supported by JCMS. PDF Best Practices for Efficient Mouse Colony Management C J. BultFollow, Animals, Computer-Security, Database-Management-Systems, Housing-Animal, Internet, Mice, Phenotype, Software. 1998 May;170(5):1165-7. doi: 10.2214/ajr.170.5.9574577. AJR Am J Roentgenol. Illustration of the three primary installation configurations for the JCMS application. Careers, Unable to load your collection due to an error. The user interfaces for JCMS have been implemented with the Microsoft Access Graphical User Interface (GUI) design tool and powered with program code written in Visual Basic for Applications Secondary responsibilities include removing unwanted data and transferring ownership of data records as needed. There are currently over 900 members subscribed to the email user group. Wean work reports can only be generated if the JCMS user records litters when they are observed in the mouse room. For each mouse the JPT can optionally display sex, genotype, and strain information. We describe here the Jackson Laboratory Colony Management System (JCMS). The application provides operational support for colony management and experimental workflows, sample and data tracking through transaction-based data entry forms, and date-driven work reports. Therefore, this application should only be used to store, track and manage non-sensitive data (research data) unless an AERB waiver is granted. Function buttons are designed to support numerous workflows and are organized by task on the function bar. BR_WR0002 has three parent mouse records (trio mating): HH-W0002, HH-W0003, and HH-W0004. The Jackson Laboratory, 610 Main Street, Bar Harbor, ME, 04609, USA, Chuck J. Donnelly,Mike McFarland,Abigail Ames,Beth Sundberg,Dave Springer,Peter Blauth&Carol J. Bult, You can also search for this author in Accessibility PDF Improving Mouse Colony Management Efficiency - Hong Kong University of Illustration of the three primary installation configurations for the JCMS application. The Sample Tracking module allows one to easily locate specific samples or generate inventory reports for storage facilities. 4). Samples can be associated with specific storage locations. New designs for cage cards are submitted periodically by the JCMS user community and distributed with updates to the application. 2000 Oct 11;284(14):1843-9. doi: 10.1001/jama.284.14.1843. Colony Management Efficiency . Web-based user forums. If FIPS 140-2 encryption at the application level is not technically possible, FIPS 140-2 compliant full disk encryption (FOE) must be implemented on the hard drive where the DBMS resides. Maier H, Schtt C, Steinkamp R, Hurt A, Schneltzer E, Gormanns P, Lengger C, Griffiths M, Melvin D, Agrawal N, Alcantara R, Evans A, Gannon D, Holroyd S, Kipp C, Raj NP, Richardson D, LeBlanc S, Vasseur L, Masuya H, Kobayashi K, Suzuki T, Tanaka N, Wakana S, Walling A, Clary D, Gallegos J, Fuchs H, de Angelis MH, Gailus-Durner V. Mamm Genome. Slider with three articles shown per slide. JCMS employs a normalized relational data model that can be hosted on either Microsoft Access or MySQL databases. No comparable entries have been identified. The JPT can also produce HTML or text formatted files for future reference or analysis. sharing sensitive information, make sure youre on a federal Every mouse, sample, and experimental data record in JCMS is associated with an owner. The Jackson Laboratory Colony Management System (JCMS) is a software application for managing data and information related to research mouse colonies, associated biospecimens, and experimental protocols. Cage cards can, The JCMS sample storage browser. The expected benefits for users of JCMS are improved vivaria efficiency, improved quality control for experimental studies, and flexible data reporting and retrieval. Data loads are transactional, so either all valid records load correctly, or the entire transaction is rolled back. The Implementer of this technology has the responsibility to ensure the version deployed is 508-compliant. There are no references identified for this entry. The browser allows users to quickly search a, Ad-hoc mouse query form and an example output table. Name (s) in local language (s): Mine des Chalanches, Allemont, Isre, Rhne-Alpes, France. The application provides operational support for colony management and experimental workflows, sample and data tracking through transaction-based data entry forms, and date-driven work reports. Richmond J (2000) The 3Rspast, present and future. Home For each Experiment test there is a user-configurable data descriptor record that defines the data type (integer, text), names, and limit constraints of each data element in an Experimental Data record.